PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G12130.1
Common NameT21B14.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 248aa    MW: 25952.1 Da    PI: 9.9805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G12130.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-073861225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  AT3G12130.1 38 KSKPCTKFFSTSGCPFGENCHFLH 61
                 7789******************** PP

2zf-CCCH35.22e-11214239127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt++C +f++ G C +GdrC+FaHg+
  AT3G12130.1 214 FKTKICERFSK-GNCTFGDRCHFAHGE 239
                  69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-83861IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-53861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-15102183IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.3E-15112181IPR004088K Homology domain, type 1
SMARTSM003222.1E-10112182IPR004087K Homology domain
PROSITE profilePS5008414.068113177IPR004088K Homology domain, type 1
PfamPF000132.3E-11115178IPR004088K Homology domain, type 1
CDDcd001056.58E-13115178No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-15208244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821213240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8213243IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7213239IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9214239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG ESGPGHVSNF GDSATARFSV  120
DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL  180
IGRLNSAAKK PPGGGLGGGG GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA  240
ELRKSGIV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.276940.0bud| flower| root| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453384040.0
Genevisible256278_at0.0
Expression AtlasAT3G12130-
AtGenExpressAT3G12130-
ATTED-IIAT3G12130-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G12130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G12130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273730.0AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBankAY0857460.0AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBankBT0250320.0BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566412.10.0KH and zinc finger CCCH domain-containing protein
SwissprotQ9C7C30.0C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLD7KZP61e-157D7KZP6_ARALL; KH domain-containing protein
STRINGAT3G12130.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Representative plantOGRP10261756
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Lorković ZJ,Barta A
    Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana.
    Nucleic Acids Res., 2002. 30(3): p. 623-35
    [PMID:11809873]
  3. Nakabayashi K,Okamoto M,Koshiba T,Kamiya Y,Nambara E
    Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed.
    Plant J., 2005. 41(5): p. 697-709
    [PMID:15703057]
  4. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  5. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]